Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs2252403 | chr17:38934285 | G/A | 2.71E-12 | 171 | 15.37 | 15.72 | 1.37 | KM Plot |
| PAAD | rs2272532 | chr2:70520498 | A/G | 0 | 178 | 15.4 | 17.32 | 1.03 | KM Plot |
| PAAD | rs2272709 | chr8:1817045 | C/G | 1.74E-5 | 173 | 16.27 | 13.03 | 7.77 | KM Plot |
| PAAD | rs2289920 | chr2:70442792 | A/G | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs2298856 | chr7:102729053 | A/T | 6.7E-8 | 178 | 16.17 | 12.2 | 3.43 | KM Plot |
| PAAD | rs2300408 | chr21:48061112 | G/A | 5.34E-5 | 176 | 7.47 | 15.62 | 15.4 | KM Plot |
| PAAD | rs2302069 | chr17:12914024 | C/T | 0.000141 | 178 | 7.87 | 15 | 16.08 | KM Plot |
| PAAD | rs2321289 | chr11:125580327 | C/A | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs2325838 | chr2:238386515 | C/A | 1.78E-5 | 177 | 15.3 | 18.17 | 5.23 | KM Plot |
| PAAD | rs2359826 | chr19:22214993 | C/T | 8.47E-13 | 178 | 15.67 | 14.35 | 1.37 | KM Plot |
| PAAD | rs2361136 | chr11:67405766 | A/T | 2.07E-5 | 175 | 15.43 | 15.67 | 7.77 | KM Plot |
| PAAD | rs2370859 | chr3:39127563 | A/T | 0.000149 | 178 | 15.27 | 16.37 | 7.47 | KM Plot |
| PAAD | rs2373424 | chr2:38891872 | A/G | 1.69E-6 | 176 | 15.87 | 14.17 | 3.43 | KM Plot |
| PAAD | rs2396371 | chr6:44946550 | C/T | 9.93E-5 | 177 | 16.07 | 16.15 | 11.98 | KM Plot |
| PAAD | rs2400263 | chr8:81514268 | G/A | 0.000107 | 171 | 15.42 | 15.1 | 3.9 | KM Plot |